Program blastn blastp blastx tblastn tblastx Database All ESTs in MG.org Acropora_palmata ESTs Anas_platyrhynchos ESTs Argopecten_irradians ESTs Calanus_finmarchicus ESTs Callinectes_sapidus ESTs Crassostrea_gigas ESTs Crassostrea_virginica ESTs Dasyatis_sabina ESTs Eubalaena_glacialis ESTs Farfantepenaeus_californiensis ESTs Fundulus_genus ESTs Homarus_americanus ESTs Karenia_brevis ESTs Leucoraja_erinacea ESTs Litopenaeus_setiferus ESTs Litopenaeus_stylirostris ESTs Litopenaeus_vannamei ESTs Montastraea_annularis ESTs Montastraea_faveolata ESTs Oculina_varicosa ESTs Oreochromis_mossambicus ESTs Palaemonetes_pugio ESTs Paralithodes_camtschaticus ESTs Penaeus_monodon ESTs Porites_astreoides ESTs Porites_porites ESTs Squalus_acanthias ESTs Tursiops_truncatus ESTs
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
